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SRX23343874: RNA-seq of U87: 13a-mRuby-cr2
1 ILLUMINA (Illumina NovaSeq 6000) run: 25.8M spots, 7.7G bases, 2.5Gb downloads

Design: After quality check of total RNA, mRNA was captured, duplex cDNA was interrupted and synthesized, A and junction sequences were added to the ends, fragments were sorted for PCR amplification, and sequencing was performed after quality control.
Submitted by: South China University of technology
Study: Characterizing the Collateral Activity of CRISPR/Cas13 in Mammalian Cells: Implications for RNA Editing and Therapeutic Applications
show Abstracthide Abstract
The CRISPR/Cas13 system has garnered attention as a potential tool for RNA editing. However, the degree of collateral activity among various Cas13 orthologs and their cytotoxic effects in mammalian cells remain contentious, potentially impacting their applications. In this study, we observed differential collateral activities for LwaCas13a and RfxCas13d in 293T and U87 cells by applying both sensitive dual-fluorescence (mRuby/GFP) reporter and quantifiable dual-luciferase (Fluc/Rluc) reporter, with LwaCas13a displaying notable activity contrary to previous reports. However, significant collateral RNA cleavage exerted only a modest impact on cell viability. Furthermore, the collateral activity of LwaCas13a mildly impeded but did not arrest, porcine embryo development. Our findings reveal that distinct collateral RNA cleavage by Cas13 slightly suppresses mammalian cell proliferation and embryo development. This could account for the lack of reported collateral effects in numerous prior studies and offers new insights into the implications of the collateral activity of Cas13 for clinical application.
Sample:
SAMN39480568 • SRS20205692 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: U87-13a-mRuby-cr2
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 25.8M spots, 7.7G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR2767651825,808,3657.7G2.5Gb2024-01-22

ID:
31557931

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